Search terms
Home
Login
/
Register
|
BLAST/BLAT
|
Docs & FAQs
Summary
setup
Not yet initialised
configure
Not yet initialised
results
Not yet initialised
display
Not yet initialised
Important Notice
We now used Blat as our default DNA search. This will make your query faster.
Enter the Query Sequence
Either
Paste sequences (max 30 sequences) in FASTA or plain text:
Or
Upload a file containing one or more FASTA sequences
Or
Enter a sequence ID or accession (EMBL, UniProt, RefSeq)
Or
Enter an existing ticket ID:
dna queries
 
 
peptide queries
 
 
Select the databases to search against
Select species:
Use 'ctrl' key to select multiple species
Oryza_sativa
Sorghum_bicolor
Zea_mays
dna database
CDNA_ALL
RNA_NC
CDNA_FGS
LATESTGP
LATESTGP_MASKED
CDNA_WGS
CDNA_ABINITIO
peptide database
PEP_ALL
PEP_FGS
PEP_WGS
PEP_ABINITIO
Select the Search Tool
BLASTN
BLASTP
BLASTX
TBLASTN
TBLASTX
Search sensitivity:
Optimise search parameters to find the following alignments
Exact matches
Near-exact matches
Near-exact matches (oligo)
Near-exact matches (short)
Allow some local missmatch
Distant homologies
No optimisation
About BlastView
BlastView provides an integrated platform for sequence similarity searches against Ensembl databases, offering access to both BLAST and BLAT programs.
We would like to hear your impressions of BlastView, especially regarding functionality that you would like to see provided in the future. Many thanks for your time.
[Feedback]